refactor: Restructure monorepo to apps/server/ and apps/web/ layout

Move src/ → apps/server/ and packages/web/ → apps/web/ to adopt
standard monorepo conventions (apps/ for runnable apps, packages/
for reusable libraries). Update all config files, shared package
imports, test fixtures, and documentation to reflect new paths.

Key fixes:
- Update workspace config to ["apps/*", "packages/*"]
- Update tsconfig.json rootDir/include for apps/server/
- Add apps/web/** to vitest exclude list
- Update drizzle.config.ts schema path
- Fix ensure-schema.ts migration path detection (3 levels up in dev,
  2 levels up in dist)
- Fix tests/integration/cli-server.test.ts import paths
- Update packages/shared imports to apps/server/ paths
- Update all docs/ files with new paths

apps/web/components.json

@@ -0,0 +1,16 @@
+{
+  "$schema": "https://ui.shadcn.com/schema.json",
+  "style": "default",
+  "rsc": false,
+  "tsx": true,
+  "tailwind": {
+    "config": "tailwind.config.ts",
+    "css": "src/index.css",
+    "baseColor": "neutral",
+    "cssVariables": true
+  },
+  "aliases": {
+    "components": "@/components",
+    "utils": "@/lib/utils"
+  }
+}