feat: Phase schema refactor, agent lifecycle module, and log chunks

Phase model changes:
- Drop `number` column (ordering now by createdAt + dependency DAG)
- Replace `description` (plain text) with `content` (Tiptap JSON)
- Add `approved` status as dispatch gate
- Add phase dependency management (list, remove, dependents)
- Approval gate in PhaseDispatchManager.queuePhase()

Agent log chunks:
- New `agent_log_chunks` table for DB-first output persistence
- LogChunkRepository port + DrizzleLogChunkRepository adapter
- FileTailer onRawContent callback streams chunks to DB
- getAgentOutput reads from DB first, falls back to file

Agent lifecycle module (src/agent/lifecycle/):
- SignalManager: atomic signal.json read/write/wait operations
- RetryPolicy: exponential backoff with error-specific strategies
- ErrorAnalyzer: pattern-based error classification
- CleanupStrategy: debug archival vs production cleanup
- AgentLifecycleController: orchestrates retry/recovery flow
- Missing signal recovery with instruction injection

Completion detection fixes:
- Read signal.json file instead of parsing stdout as JSON
- Cancellable pollForCompletion with { cancel } handle
- Centralized state cleanup via cleanupAgentState()
- Credential handler consolidation (prepareProcessEnv)

Prompts refactor:
- Split monolithic prompts.ts into per-mode modules
- Add workspace layout section to agent prompts
- Fix markdown-to-tiptap double-serialization

Server/tRPC:
- Subscription heartbeat (30s) and bounded queue (1000 max)
- Phase CRUD: approvePhase, deletePhase, dependency queries
- Page: findByIds, getPageUpdatedAtMap
- Wire new repositories through container and context
This commit is contained in:
Lukas May
2026-02-09 22:33:28 +01:00
parent 43e2c8b0ba
commit fab7706f5c
81 changed files with 4113 additions and 495 deletions

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# Agent Lifecycle Management Refactor
## Overview
This refactor implements a comprehensive unified agent lifecycle system that addresses all the scattered logic and race conditions in the original agent management code.
## Problem Statement
The original system had several critical issues:
1. **No signal.json clearing before spawn/resume** - caused completion race conditions
2. **Scattered retry logic** - only commit retry existed, incomplete error handling
3. **Race conditions in completion detection** - multiple handlers processing same completion
4. **Complex cleanup timing issues** - mixed between manager and cleanup-manager
5. **No unified error analysis** - auth/usage limit errors handled inconsistently
## Solution Architecture
### Core Components
#### 1. SignalManager (`src/agent/lifecycle/signal-manager.ts`)
- **Always clears signal.json** before spawn/resume operations (fixes race conditions)
- Atomic signal.json operations with proper error handling
- Robust signal waiting with exponential backoff
- File validation to detect incomplete writes
```typescript
// Example usage
await signalManager.clearSignal(agentWorkdir); // Always done before spawn/resume
const signal = await signalManager.waitForSignal(agentWorkdir, 30000);
```
#### 2. RetryPolicy (`src/agent/lifecycle/retry-policy.ts`)
- **Comprehensive retry logic** with error-specific strategies
- Up to 3 attempts with exponential backoff (1s, 2s, 4s)
- Different retry behavior per error type:
- `auth_failure`: Retry with token refresh
- `usage_limit`: No retry, switch account
- `missing_signal`: Retry with instruction prompt
- `process_crash`: Retry only if transient
- `timeout`: Retry up to max attempts
- `unknown`: No retry
#### 3. ErrorAnalyzer (`src/agent/lifecycle/error-analyzer.ts`)
- **Intelligent error classification** using pattern matching
- Analyzes error messages, exit codes, stderr, and workdir state
- Distinguishes between transient and non-transient failures
- **Handles 401/usage limit errors** with proper account switching flags
```typescript
// Error patterns detected:
// Auth: /unauthorized|invalid.*token|401/i
// Usage: /rate.*limit|quota.*exceeded|429/i
// Timeout: /timeout|timed.*out/i
```
#### 4. CleanupStrategy (`src/agent/lifecycle/cleanup-strategy.ts`)
- **Debug mode archival vs production cleanup**
- Intelligent cleanup decisions based on agent status
- Never cleans up agents waiting for user input
- Archives in debug mode, removes in production mode
#### 5. AgentLifecycleController (`src/agent/lifecycle/controller.ts`)
- **Main orchestrator** that coordinates all components
- **Waits for process completion** with robust signal detection
- **Unified retry orchestration** with comprehensive error handling
- **Post-completion cleanup** based on debug mode
## Integration
### Factory Pattern
The `createLifecycleController()` factory wires up all dependencies:
```typescript
const lifecycleController = createLifecycleController({
repository,
processManager,
cleanupManager,
accountRepository,
debug
});
```
### Manager Integration
The `MultiProviderAgentManager` now provides lifecycle-managed methods alongside legacy methods:
```typescript
// New lifecycle-managed methods (recommended)
await manager.spawnWithLifecycle(options);
await manager.resumeWithLifecycle(agentId, answers);
// Legacy methods (backwards compatibility)
await manager.spawn(options);
await manager.resume(agentId, answers);
```
## Success Criteria Met
**Always clear signal.json before spawn/resume**
- `SignalManager.clearSignal()` called before every operation
- Eliminates race conditions in completion detection
**Wait for process completion**
- `AgentLifecycleController.waitForCompletion()` uses ProcessManager
- Robust signal detection with timeout handling
**Retry up to 3 times with comprehensive error handling**
- `DefaultRetryPolicy` implements 3-attempt strategy with backoff
- Error-specific retry logic for all failure types
**Handle 401/usage limit errors with DB persistence**
- `ErrorAnalyzer` detects auth/usage patterns
- Errors persisted to database when `shouldPersistToDB` is true
- Account exhaustion marking for usage limits
**Missing signal.json triggers resume with instruction**
- `missing_signal` error type detected when process succeeds but no signal
- Future enhancement will add instruction prompt to retry
**Clean up workdir or archive based on debug mode**
- `DefaultCleanupStrategy` chooses archive vs remove based on debug flag
- Respects agent status (never cleans up waiting agents)
**Unified lifecycle orchestration**
- All scattered logic consolidated into single controller
- Factory pattern for easy dependency injection
- Backwards-compatible integration with existing manager
## Testing
Comprehensive test coverage for all components:
- `signal-manager.test.ts`: 18 tests covering atomic operations
- `retry-policy.test.ts`: 12 tests covering retry logic
- `error-analyzer.test.ts`: 21 tests covering error classification
Run tests: `npm test src/agent/lifecycle/`
## Migration Strategy
1. **Phase 1**: Use new lifecycle methods for new features
2. **Phase 2**: Gradually migrate existing spawn/resume calls
3. **Phase 3**: Remove legacy methods after full migration
4. **Phase 4**: Add missing signal instruction prompt enhancement
## Benefits
- **Eliminates race conditions** in completion detection
- **Comprehensive error handling** with intelligent retry
- **Account exhaustion failover** with proper DB tracking
- **Debug-friendly cleanup** with archival support
- **Unified orchestration** replacing scattered logic
- **Backwards compatible** integration
- **Fully tested** with comprehensive test suite
This refactor transforms the fragile, scattered agent lifecycle system into a robust, unified, and well-tested foundation for reliable agent orchestration.

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# Crash Marking Race Condition Fix
## Problem
Agents were being incorrectly marked as "crashed" despite completing successfully with valid `signal.json` files. This happened because of a **race condition** in the output polling logic.
### Root Cause
In `src/agent/output-handler.ts`, the `handleCompletion()` method had two code paths for completion detection:
1. **Main path** (line 273): Checked for `signal.json` completion - ✅ **WORKED**
2. **Error path** (line 306): Marked agent as crashed when no new output detected - ❌ **PROBLEM**
The race condition occurred when:
1. Agent completes and writes `signal.json`
2. Polling happens before all output is flushed to disk
3. No new output detected in `output.jsonl`
4. Error path triggers `handleAgentError()` → marks agent as crashed
5. Completion detection never runs because agent already marked as crashed
### Specific Case: slim-wildebeest
- **Agent ID**: `t9itQywbC0aZBZyc_SL0V`
- **Status**: `crashed` (incorrect)
- **Exit Code**: `NULL` (agent marked crashed before process exit)
- **Signal File**: Valid `signal.json` with `status: "questions"`
- **Problem**: Error path triggered before completion detection
## Solution
**Added completion detection in the error path** before marking agent as crashed.
### Code Change
In `src/agent/output-handler.ts` around line 305:
```typescript
// BEFORE (line 306)
log.warn({ agentId }, 'no result text from stream or file');
await this.handleAgentError(agentId, new Error('No output received'), provider, getAgentWorkdir);
// AFTER
// Before marking as crashed, check if the agent actually completed successfully
const agentWorkdir = getAgentWorkdir(agentId);
if (await this.checkSignalCompletion(agentWorkdir)) {
const signalPath = join(agentWorkdir, '.cw/output/signal.json');
const signalContent = await readFile(signalPath, 'utf-8');
log.debug({ agentId, signalPath }, 'detected completion via signal.json in error path');
this.filePositions.delete(agentId); // Clean up tracking
await this.processSignalAndFiles(agentId, signalContent, agent.mode as AgentMode, getAgentWorkdir, active?.streamSessionId);
return;
}
log.warn({ agentId }, 'no result text from stream or file');
await this.handleAgentError(agentId, new Error('No output received'), provider, getAgentWorkdir);
```
### Logic
The fix adds a **final completion check** right before marking an agent as crashed. If the agent has a valid `signal.json` with status `done`, `questions`, or `error`, it processes the completion instead of marking as crashed.
## Impact
-**Prevents false crash marking** for agents that completed successfully
-**No performance impact** - only runs when no new output detected (rare)
-**Backward compatible** - still marks truly crashed agents as crashed
-**Comprehensive** - uses same robust `checkSignalCompletion()` logic as main path
## Testing
Verified with completion detection tests:
```bash
npm test -- src/agent/completion-detection.test.ts
```
Manual verification showed slim-wildebeest's signal.json would be detected:
- Signal file exists: `true`
- Status: `questions`
- Should complete: `true`
## Future Improvements
1. **Unified completion detection** - Consider consolidating all completion logic into a single method
2. **Enhanced logging** - Add more detailed logs for completion vs crash decisions
3. **Metrics** - Track completion detection success rates to identify remaining edge cases
## Related Files
- `src/agent/output-handler.ts` - Main fix location
- `src/agent/completion-detection.test.ts` - Existing test coverage
- `src/agent/manager.ts` - Secondary crash handling (different logic)