When git worktree add fails with "branch already used by worktree at
<path>", parse the stale path, force-remove it, and retry once. Fixes
blocked task retries where the old agent-workdirs directory still exists
on disk and git worktree prune alone can't clear the reference.
The `get(id)` method on SimpleGitWorktreeManager used `path.endsWith(id)`
to find worktrees. Since all agents working on the same project create
worktrees with the same project name suffix (e.g., "codewalk-district"),
cleanup for one agent could match and delete another agent's worktree.
Fix: match on `basename(worktreesDir)/id` so each manager's lookups are
scoped to its own worktree base directory.
Three bugs causing empty phase diffs when server restarts during agent
execution:
1. Startup ordering race: reconcileAfterRestart() emitted agent:stopped
before orchestrator registered listeners — events lost. Moved
reconciliation to after orchestrator.start().
2. Stuck in_progress tasks: recoverDispatchQueues() only re-queued
pending tasks. Added recovery for in_progress tasks whose agents
are dead (not running/waiting_for_input).
3. Branch force-reset destroys work: git branch -f wiped commits when
a second agent was dispatched for the same task. Now checks if the
branch has commits beyond baseBranch before resetting.
Also adds:
- agent:crashed handler with auto-retry (MAX_TASK_RETRIES=3)
- retryCount column on tasks table + migration
- retryCount reset on manual retryBlockedTask()
Throws if branch and baseBranch are identical, preventing
git branch -f from force-resetting shared branches (like
the initiative branch) when accidentally passed as both.
When re-dispatching tasks, the branch from a previous run may still
exist. Instead of failing with "a branch named X already exists",
reset the existing branch to the base and check it out.
Move src/ → apps/server/ and packages/web/ → apps/web/ to adopt
standard monorepo conventions (apps/ for runnable apps, packages/
for reusable libraries). Update all config files, shared package
imports, test fixtures, and documentation to reflect new paths.
Key fixes:
- Update workspace config to ["apps/*", "packages/*"]
- Update tsconfig.json rootDir/include for apps/server/
- Add apps/web/** to vitest exclude list
- Update drizzle.config.ts schema path
- Fix ensure-schema.ts migration path detection (3 levels up in dev,
2 levels up in dist)
- Fix tests/integration/cli-server.test.ts import paths
- Update packages/shared imports to apps/server/ paths
- Update all docs/ files with new paths
